Alignment of alleles: Atlantic cod (Gadus morhua) IGIV1S18

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   V   T   V   T   Q   T   P   V       V   S   V   S   P   E   S   T   V   T
  AJ225263,IGIV1S18*01          CAG GTG ACT GTG ACT CAG ACA CCA GTA ... GTG TCC GTT AGT CCA GAA TCC ACA GTC ACT

  AJ225264,IGIV1S18*02          --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---

                                                         __________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   T   C   K   I   N   P   A   V   Y   R   D   G   D   G   D   N       M   F
  AJ225263,IGIV1S18*01          CTG ACG TGT AAA ATA AAC CCA GCA GTT TAC AGA GAT GGT GAT GGA GAT AAT ... ATG TTC

  AJ225264,IGIV1S18*02          --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... --- ---

                                                                                             ______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   K   P   G   E   A   P   K   L   F   I   K   Y   T   N
  AJ225263,IGIV1S18*01          TGG TAC CAA CAG AAA CCT GGA GAA GCC CCG AAG CTT TTC ATA AAA TAT ACA AAC ... ...

  AJ225264,IGIV1S18*02          --- --- --- --- --- --- --- --- --- --- --- --C --- --- --- --- --- --- ... ...

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     Q   L   V   S   P   T   P       A   R   F   S   G   S   G
  AJ225263,IGIV1S18*01          ... ... ... ... ... CAA CTT GTA TCA CCA ACA CCA ... GCT CGG TTT AGT GGC AGT GGA

  AJ225264,IGIV1S18*02          ... ... ... ... ... --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                         S   S   T   D   F   S   L   T   I   N   G   A   Q   R   E   D   A   A
  AJ225263,IGIV1S18*01          ... ... AGC AGC ACT GAC TTC TCT CTG ACC ATC AAC GGC GCC CAG CGT GAA GAC GCA GCA

  AJ225264,IGIV1S18*02          ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                __________CDR3-IMGT____________
                                101 102 103 104 105 106 107 108 109 110 111 112
                                 V   Y   H   C   Q   S   Y   H   S   G   G   V
  AJ225263,IGIV1S18*01          GTT TAT CAC TGT CAG AGT TAC CAT AGT GGC GGT GTG  #c

  AJ225264,IGIV1S18*02          --- --- --T --- --- --- --- --- --- --- --- ---  #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 21/03/2002
Last updated: Friday, 22-Sep-2023 18:24:46 CEST
Author: Nathalie Bosc